PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000372.1.g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 378aa    MW: 41522.4 Da    PI: 8.5953
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000372.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.24e-3398155258
                     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                     ++v YkeClkNhAaslGgha+DGCgEf ps+ ++ +++++lkCaACgCHRnFHRr+  
  FANhyb_rscf00000372.1.g00013.1  98 TAVSYKECLKNHAASLGGHALDGCGEFFPSPISNpSDPTSLKCAACGCHRNFHRRDAP 155
                                     5799***************************9999********************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-27100153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-29102153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.751102153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-22102152IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.82E-16235305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26238307IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-25246302IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNLILSPCPR RKRSPFFPER FEVNKALIFD PHFPTQAMDF KSISTTATAA ATINTPDTDT  60
ELLPTSDPKS SAFRSLSYNN GPLLKPHHHH HPLPPPQTAV SYKECLKNHA ASLGGHALDG  120
CGEFFPSPIS NPSDPTSLKC AACGCHRNFH RRDAPDEPPA PTRHHRLLLP PPPAQHSMSP  180
SPSRSTSPGP STTLSPHSPP PVSHVPPSFF GTPTQMLLAL SSAAYTTAAP PSDEKLRNPT  240
AGNIGRKRSR TKFSQEQKDK MFCFAEKLGW RMQRSEDKVV EDFCDEIGIG RNVFKVWMHN  300
NKHHMVKRKQ MLLSSAGLIN DGGDAGGGAS FDSNAEENNN NNNDNVNVII NSPNESSRED  360
HHHHQRFYLS NNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-212463031774ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298431.20.0PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLM5XJ808e-92M5XJ80_PRUPE; Uncharacterized protein
STRINGGLYMA01G05810.14e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-27zinc finger homeodomain 1